OrangerV1, Main, Exploration, bibRecord, 002228

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Identifieur interne : 002228 ( Main/Exploration ); précédent : 002227; suivant : 002229

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Auteurs : Yong Hoon Lee [Corée du Sud] ; Seungdon Lee [Corée du Sud] ; DONG HEE LEE [Corée du Sud] ; SANG HYE JI [Corée du Sud] ; HYUN YOUNG CHANG [Corée du Sud] ; Sunggi Heu [Corée du Sud] ; JAE WOOK HYUN [Corée du Sud] ; Dong-Soo Ra [Corée du Sud] ; EUN WOO PARK [Corée du Sud]

Source :

European journal of plant pathology [ 0929-1873 ] ; 2008.

RBID : Pascal:08-0225382

Descripteurs français

Pascal (Inist)
- Citrus sinensis, Bactérie, Xanthomonas axonopodis, Souche, Corée, Spectre hôte, Réaction chaîne polymérase, Méthode fingerprint, DNA ribosomique, Isolat, Pouvoir pathogène, Pathotype, Microbiologie, Phytopathologie, Phytopathogène, Plante, Citrus paradisi Poncirus trifoliata.

English descriptors

KwdEn :
- Bacteria, Citrus sinensis, Fingerprint method, Host range, Isolate, Korea, Microbiology, Pathogenicity, Pathotype, Plant, Plant pathogen, Plant pathology, Polymerase chain reaction, Ribosomal DNA, Strain, Xanthomonas axonopodis.

Abstract

New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.

Affiliations:

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Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacteria</term>
<term>Citrus sinensis</term>
<term>Fingerprint method</term>
<term>Host range</term>
<term>Isolate</term>
<term>Korea</term>
<term>Microbiology</term>
<term>Pathogenicity</term>
<term>Pathotype</term>
<term>Plant</term>
<term>Plant pathogen</term>
<term>Plant pathology</term>
<term>Polymerase chain reaction</term>
<term>Ribosomal DNA</term>
<term>Strain</term>
<term>Xanthomonas axonopodis</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Citrus sinensis</term>
<term>Bactérie</term>
<term>Xanthomonas axonopodis</term>
<term>Souche</term>
<term>Corée</term>
<term>Spectre hôte</term>
<term>Réaction chaîne polymérase</term>
<term>Méthode fingerprint</term>
<term>DNA ribosomique</term>
<term>Isolat</term>
<term>Pouvoir pathogène</term>
<term>Pathotype</term>
<term>Microbiologie</term>
<term>Phytopathologie</term>
<term>Phytopathogène</term>
<term>Plante</term>
<term>Citrus paradisi  Poncirus trifoliata</term>
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<front><div type="abstract" xml:lang="en">New Xanthomonas isolates causing citrus bacterial canker in Korea were differentiated primarily on the basis of host range by comparison with reference strains. The new isolates were pathogenic to Citrus sinensis, C. paradisi, C. limon and C. unshiu and formed crater-like canker on the plants; this indicated that they were X axonopodis (X.a.) pv. citri A types. Molecular characterization using rep-PCR fingerprinting and 16S rDNA sequence analysis was also performed. Cluster analysis by combining the band patterns of ERIC-, BOX- and REP-PCR clearly separated one group including only X. a. pv. citrumelo and the other group including X. a. pv. citri and X. a. pv. aurantifolii strains. There was a clear separation between X. a. pv. citri Asiatic types and X. a. pv. aurantifolii B, C types in the second group. Partial sequence analysis of 16S rDNA revealed that all strains of X. a. pv. aurantifolii B and C type, and X. a. pv. citrumelo formed a distinct cluster with a similarity of 99%. Our results indicate that the isolates causing citrus canker in Korea belong to the A type of X. a. pv. citri.</div>
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Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

Differentiation of citrus bacterial canker strains in Korea by host range, rep-PCR fingerprinting and 16S rDNA analysis

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Abstract

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